2009

1. W. Eberle, L. Holder, and D. Cook, “4 Identifying Threats Using Graph-based Anomaly Detection,” Machine Learning in Cyber Trust: Security, Privacy, and Reliability (2009): 73.
2. N. S Ketkar, L. B Holder, and D. J Cook, “gRegress: Extracting Features from Graph Transactions for Regression.”
3. C. hun You, L. B Holder, and D. J Cook, “Learning patterns in the dynamics of biological networks,” in , 2009, 977–986.
4. C. hun You, L. B Holder, and D. J Cook, “Substructure Analysis of Metabolic Pathways by Graph-Based Relational Learning,” Biomedical Data and Applications (2009): 237.

2008

1. M. G Hudelson et al., “High Confidence Predictions of Drug- Drug Interactions: Predicting Affinities for Cytochrome P450 2C9 with Multiple Computational Methods,” Journal of Medicinal Chemistry 51, no. 3 (2008): 648–654.
2. C. hun You, L. B Holder, and D. J Cook, “Graph-based Temporal Mining of Metabolic Pathways with Microarray Data.”, in ACM SIGKDD Workshop on Data Mining in Bioinformatics (BIOKDD), August 2008.
3. C. You, L. Holder, and D. Cook, “Graph-based data mining in dynamic networks: Empirical comparison of compression-based and frequency-based subgraph mining,” in , 2008.

2007

1. D. J Cook, L. B Holder, and G. M Youngblood, “Graph-based analysis of human transfer learning using a game testbed,” IEEE Transactions on Knowledge and Data Engineering 19, no. 11 (2007): 1465.
2. J. Kukluk et al., “Learning node replacement graph grammars in metabolic pathways,” Proceedings of BIOCOMP (2007).
3. C. H You and L. B Holder, “Application Of Graph-based Data Mining To Biological Networks” (2007).

2006

1. D. J Cook and L. B Holder, Mining graph data (Wiley-Blackwell, 2006).
2. N. S Ketkar, L. B Holder, and D. J Cook, “Mining in the Proximity of Subgraphs.”
3. J. Kukluk, L. Holder, and D. Cook, “Inference of Node Replacement Recursive Graph Grammars,” in Sixth SIAM International Conference on Data Mining, 2006.
4. C. You, L. Holder, and D. Cook, “Application of graph-based data mining to metabolic pathways,” in , 2006.

2005

1. N. S Ketkar, L. B Holder, and D. J Cook, “Subdue: compression-based frequent pattern discovery in graph data,” in Proceedings of the 1st international workshop on open source data mining: frequent pattern mining implementations, 2005, 76.
2. N. S Ketkar, L. B Holder, and D. J Cook, “Comparison of graph-based and logic-based multi-relational data mining,” ACM SIGKDD Explorations Newsletter 7, no. 2 (2005): 64–71.
3. N. S Ketkar, L. B Holder, and D. J Cook, “Qualitative comparison of graph-based and logic-based multi-relational data mining: a case study,” in Proceedings of the 4th international workshop on Multi-relational mining, 2005, 25–32.
4. L. B Holder, D. J Cook, and N. S Ketkar, Comparison of Graph-Based and Logic-Based Multi-Relational Data Mining (Storming Media, 2005).